PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012852-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 217aa    MW: 24312.5 Da    PI: 4.8382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012852-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-052371555
                      HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      ++++ + +Lr+++Pk       K++K +i+  A+ Y+ +Lq
  PSME_00012852-RA  2 KMKETLLNLRSVVPKM-----SKMDKESIVGDAISYVLDLQ 37
                      6889999********6.....5*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.061136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-9260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-8251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKMKETLLNL RSVVPKMSKM DKESIVGDAI SYVLDLQKKI QEIKDEIKLL SSSNRPDHIQ  60
LITAETTEPL TNADCASMKN LADKLVKHGK IQLEPCSISK SEINRQYISG NDNDLHHGFH  120
LQELTNIGSA RLYENLSGQS SSYSEPKTLT DLNPSSISVC SELIAMDHQI NNLNWMDMDE  180
NLGQFKWDDN DLEIIGILRR CDAAAAVGAS NIQEFAY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN63e-24B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-07FER-like regulator of iron uptake