PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012853-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 404aa MW: 44420.2 Da PI: 5.4203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012853-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	220	262	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR ++++ + +Lr+++Pk + K++K +i+ A+ Y+ +Lq PSME_00012853-RA 220 TERKRRMKLKETLLNLRSVVPKiS------KMDKQSIVGDAISYVLDLQ 262 7*******************66......***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.49E-10	209	266	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-12	210	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.224	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-14	213	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-7	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MRVPEGTRDD NGASRLLHLL QRSSVFATGL GKTKRDNPAA SISSPLAFNL PTLPSTMLLA 60 SSPRGLRFAS GRIGDMDFPA GFGFDFDFVT QPCSISKSEI NGQYINDNHN DLDHGFHLQD 120 MTHIGSAGLF ENLSGQSSSY SEPKTLTDLN PSSISVCSEL ITMDHQNWMD MDENSGQFDW 180 DDTDPEIIGS NPAATQALSS NGGVVLQQPQ QRRTSKNLYT ERKRRMKLKE TLLNLRSVVP 240 KISKMDKQSI VGDAISYVLD LQKKVQEIQD EIKVLSTSNR PDHHTQLMAE TIEPLTNADC 300 ASSMKNLPDK LVKHGKIQLE VDICDVGEGG IYHVRIEMKK ESGVLVKLTR ALESLPVHII 360 NSNICCFDES IVFTLTVNGN LMENPGAANL EDMIRQTIGG ACLG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MRVPEGTRDD NGASRLLHLL QRSSVFATGL GKTKRDNPAA SISSPLAFNL PTLPSTMLLA  60
SSPRGLRFAS GRIGDMDFPA GFGFDFDFVT QPCSISKSEI NGQYINDNHN DLDHGFHLQD  120
MTHIGSAGLF ENLSGQSSSY SEPKTLTDLN PSSISVCSEL ITMDHQNWMD MDENSGQFDW  180
DDTDPEIIGS NPAATQALSS NGGVVLQQPQ QRRTSKNLYT ERKRRMKLKE TLLNLRSVVP  240
KISKMDKQSI VGDAISYVLD LQKKVQEIQD EIKVLSTSNR PDHHTQLMAE TIEPLTNADC  300
ASSMKNLPDK LVKHGKIQLE VDICDVGEGG IYHVRIEMKK ESGVLVKLTR ALESLPVHII  360
NSNICCFDES IVFTLTVNGN LMENPGAANL EDMIRQTIGG ACLG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LRN6	1e-83	B8LRN6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-19	bHLH family protein