PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012897-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 140aa    MW: 15640.4 Da    PI: 4.0763
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012897-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26023.21.8e-0714061100
            DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       +vyeA  r+rd v+G++gvi++lq+++++ + + +++ ++
  PSME_00012897-RA   1 MVYEASERVRDNVHGCAGVIHDLQKKVAEIQLQSKMVSTQ 40 
                       69**************************999998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.0E-6137IPR004883Lateral organ boundaries, LOB
CDDcd004273.16E-45579No hitNo description
Gene3DG3DSA:1.10.287.3102.7E-45580IPR001854Ribosomal protein L29
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MVYEASERVR DNVHGCAGVI HDLQKKVAEI QLQSKMVSTQ LADSSSVGVL INDLEKKIAE  60
LQSQLDSTQA ELANLRLQHT NLLYSISTEG NYLESWGYSF CYEEGLDPNL YTAALQENGD  120
TLMNPTVFDN VDPTQLWEAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-10LOB domain-containing protein 1