PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012898-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 84aa MW: 9159.58 Da PI: 9.7177

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012898-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.8	8.9e-20	30	77	2	49
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 CaaCk+ r+kC+++Cvlapyfp+++p+kf v+++FG+++++kll+ PSME_00012898-RA 30 CAACKINRKKCSDKCVLAPYFPQDDPQKFLSVNRVFGNKHLIKLLQVC 77 ********************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.482	28	84	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-18	30	78	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MSESKGAKSG GVVQMSDTSA SKRSDVASTC AACKINRKKC SDKCVLAPYF PQDDPQKFLS 60 VNRVFGNKHL IKLLQVCDSR ATYI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960340.1	1e-17	LOB domain-containing protein 1
Swissprot	Q9SK08	9e-17	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	B8LP64	2e-20	B8LP64_PICSI; Uncharacterized protein
STRING	Si024430m	5e-17	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-19	LOB domain-containing protein 11