PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012900-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 91aa    MW: 10144.6 Da    PI: 4.7864
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012900-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.13.3e-1014061100
            DUF260  61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       +vyeA  r+rdPv+G+ gvi+ lq+++++l+ +l+++kee
  PSME_00012900-RA   1 MVYEASERVRDPVHGCKGVIHGLQKKVAKLQLQLESAKEE 40 
                       69*********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.221141IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-8138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MVYEASERVR DPVHGCKGVI HGLQKKVAKL QLQLESAKEE LGNARLQYVN LLTLITGYEE  60
ASHPYFYTAT LPEIEADTLM NPAVLDNGDP M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI99e-20B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-09LOB domain-containing protein 1