PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00012906-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 241aa MW: 26622.4 Da PI: 7.9219

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00012906-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	15	62	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 +g+WT++Ed++l + ++ +G g+W t a+ g gRt++++k +w+ PSME_00012906-RA 15 KGPWTEDEDLRLTQFIRAHGEGRWPTLAKNAGriPGRTDNEIKKYWNR 62 79********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	10	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.33E-14	10	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.81	10	68	IPR017930	Myb domain
SMART	SM00717	9.2E-13	14	66	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-12	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-12	17	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRKPCYNAK EGINKGPWTE DEDLRLTQFI RAHGEGRWPT LAKNAGRIPG RTDNEIKKYW 60 NRRLNKKVHG NACIDQLKSV GPTEPNVKEP AVSTTPTLIA NQLGERNEVI AYCVKEELKK 120 GSTSSSCNVS GNKLPGKTLI SSMKQNPSSC NLDAGTVLTK MKLWNPVQLN LTISSSWASS 180 NFLLMDAADS IVDKRPDGYT EENVPPQSHC CMFDSVNVIC EGCIDEMYSL PFPEVIPPVP 240 I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	2e-15	myb domain protein 74