PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00013329-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 150aa MW: 16407.3 Da PI: 4.3107

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00013329-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.4	1.1e-14	6	51	56	101
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +a+ ++ yeA+ar++dPvyG+v +i++lqqq+++l+aela ++++l PSME_00013329-RA 6 EAVVTISYEAHARLQDPVYGCVTHIFALQQQVASLQAELAFVQAQL 51 7999*************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.0E-12	6	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MPDCCEAVVT ISYEAHARLQ DPVYGCVTHI FALQQQVASL QAELAFVQAQ LVSRVSSGSA 60 SISANHPVIS SSSYSQHLQF LAHLSLSCQP IPQPYNALLS RVKEENSCGF STYMDCDFFV 120 SPSDSSSPLM EVLQRCRSLE ENEGEDNGEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026397266.1	4e-21	LOB domain-containing protein 16-like
TrEMBL	D5A9D3	8e-67	D5A9D3_PICSI; Uncharacterized protein
STRING	POPTR_0002s04200.1	3e-19	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-19	lateral organ boundaries-domain 29