PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00013336-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BES1

Protein Properties

Length: 390aa MW: 43987.8 Da PI: 5.1711

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00013336-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	81.7	2.1e-25	19	84	11	76
DUF822 11 ErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 ErE k+RER R ai++ki+ GLR++G++++p D+ eVl+ L++eA w+ve D ttyr++ + PSME_00013336-RA 19 ERETSKLRERNRQAITTKIFQGLRKYGGFNIPPPLDISEVLRDLAEEASWIVESDDTTYRNHVYMN 84 9***********************************************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.3E-23	19	80	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.30.429.10	1.1E-18	298	361	No hit	No description
SuperFamily	SSF55331	2.66E-14	299	361	IPR014347	Tautomerase/MIF superfamily
ProDom	PD004816	4.0E-20	300	366	IPR001398	Macrophage migration inhibitory factor
Pfam	PF01187	1.2E-8	300	361	IPR001398	Macrophage migration inhibitory factor

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MGRLEIDFIE KMGRLGAIER ETSKLRERNR QAITTKIFQG LRKYGGFNIP PPLDISEVLR 60 DLAEEASWIV ESDDTTYRNH VYMNILRTMV KEGLGFKEVI TMVQQDMQYI DETPDLDTRV 120 ELIKTLNNVS AGKILSRRIS PKGFEASASK EKKKPKEGDN VVEEDPSDMP SLLELKHIYY 180 ELMTRSPDSD YRSGSDSENE TKSVSDTESD SDNDVGKKSA KENAHSHIVE KPQFFDIVEE 240 GELVKENEQK TKEMDVVEFK AHRSPDSRSP RSDSPSSYRP VFLYPFIEMI CQFHGSVLKL 300 KGSVAISFGG TQEPTAYGEL VSIGGLGSDT NKKLSAAITA TLERKVNVPK SRFYIKFYDV 360 KFGSQFLSLF CLCENGFPIE PSSAPVVLIF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MGRLEIDFIE KMGRLGAIER ETSKLRERNR QAITTKIFQG LRKYGGFNIP PPLDISEVLR  60
DLAEEASWIV ESDDTTYRNH VYMNILRTMV KEGLGFKEVI TMVQQDMQYI DETPDLDTRV  120
ELIKTLNNVS AGKILSRRIS PKGFEASASK EKKKPKEGDN VVEEDPSDMP SLLELKHIYY  180
ELMTRSPDSD YRSGSDSENE TKSVSDTESD SDNDVGKKSA KENAHSHIVE KPQFFDIVEE  240
GELVKENEQK TKEMDVVEFK AHRSPDSRSP RSDSPSSYRP VFLYPFIEMI CQFHGSVLKL  300
KGSVAISFGG TQEPTAYGEL VSIGGLGSDT NKKLSAAITA TLERKVNVPK SRFYIKFYDV  360
KFGSQFLSLF CLCENGFPIE PSSAPVVLIF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107162	1e-61	BT107162.1 Picea glauca clone GQ03103_I07 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	2e-14	beta-amylase 2