PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013707-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family YABBY
Protein Properties Length: 220aa    MW: 24197.4 Da    PI: 7.2608
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013707-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY29.62.2e-092152535
             YABBY  5 ssseqvCyvqCnfCntilavsvPsts.lfkvv 35
                      s++e++Cyv+CnfC+tilav+  + s l++ v
  PSME_00013707-RA 21 SATEHLCYVHCNFCSTILAVEDAHHSaLLNFV 52
                      689*****************865544155555 PP
2YABBY153.71.7e-477320124170
             YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvi 116
                       vsvPs+slfk+vtvrCGhC +llsvn++ as  l             + +++ +++++ +s       ++ s+++e  ++   +e+ ++    
  PSME_00013707-RA  73 VSVPSSSLFKIVTVRCGHCNHLLSVNMMGASPPLEPG----------QIQNDYSKDSASSSAS-----STISERTE--NSYAGNEAVKMFS-S 147
                       9***********************9999876544332..........2333333332222211.....11111111..1222334444444.7 PP

             YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        PPekrqrvPs ynrfikeeiqrika+nPdi h+eafsaaaknWahfP+ihfgl
  PSME_00013707-RA 148 MPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGL 201
                       8***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-62252IPR006780YABBY protein
PfamPF046903.4E-5273201IPR006780YABBY protein
SuperFamilySSF470955.63E-7145194IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.9E-4150193IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
GYNLFGGSFC ASAMSGCIDS SATEHLCYVH CNFCSTILAV EDAHHSALLN FVFVFVLSIS  60
DKDLESAIPC SEVSVPSSSL FKIVTVRCGH CNHLLSVNMM GASPPLEPGQ IQNDYSKDSA  120
SSSASSTISE RTENSYAGNE AVKMFSSMPP EKRQRVPSVY NRFIKEEIQR IKAKNPDIRH  180
KEAFSAAAKN WAHFPHIHFG LMLENNKQAT IDKGNLRVTF
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8715770.0LN871577.1 Pseudotsuga menziesii partial mRNA for YABBY transcription factor (YAB C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247851.12e-58PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ8GW462e-53YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD5ADY51e-107D5ADY5_PICSI; Uncharacterized protein
STRINGXP_010247851.18e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-54YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]