PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013774-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 376aa    MW: 42063.5 Da    PI: 8.6357
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013774-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.3e-29184241359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ k+s+ prsYY+C+ a +Cpvkk+v+++a+dp++v++tYegeH+h+
  PSME_00013774-RA 184 DGCQWRKYGQKMTKSSPLPRSYYKCSWApDCPVKKQVQKCAHDPTIVITTYEGEHTHP 241
                       9*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-31172241IPR003657WRKY domain
PROSITE profilePS5081125.717177243IPR003657WRKY domain
SuperFamilySSF1182904.97E-26178242IPR003657WRKY domain
SMARTSM007742.0E-33182242IPR003657WRKY domain
PfamPF031065.5E-25184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEDHKNKVEV KILVAEMNRV EVENQKLKSM VKSMTRKYNY LQKQIRSLVQ PDRTQIFNSD  60
HHRSKDVLCL GSSINVDSGG EVSHQAEQSS GCNEQIEEKE KKNVKFMDDY HLLSKKRKIN  120
YMKSEQIENG INLSVDDSPS CHGESSNKMH RLVPTRDSGE QITAATPKRI VLARTGSEEY  180
ARGDGCQWRK YGQKMTKSSP LPRSYYKCSW APDCPVKKQV QKCAHDPTIV ITTYEGEHTH  240
PLSPLAMAVM HSTTSSNQRP FSEGLNTVNF VADNQLISTS SPFPTITLDL ADNRPNPNPG  300
LQLQPTNLTA GSFLQHSTPL PINNMRLLFD QNQLEYNSAT MNSVTALKAD PNFTAALAVA  360
IASSMLNLGD PVQSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-201842441675WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-132A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-43WRKY family protein