PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013876-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31892.9 Da    PI: 9.0135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013876-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17162216256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ +++k q   Lee F +nr p+ ++r +LA++l+L+  qV vWFqN+Ra+ k
  PSME_00013876-RA 162 KKKPRLSKGQYALLEESFSNNRLPTVNQRHDLATELKLPLHQVEVWFQNKRARTK 216
                       56667999*********************************************98 PP
2HD-ZIP_I/II864.9e-28162249188
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +kk rlsk q +lLEesF++++  + +++++la+eL+l  +qv+vWFqn+RARtk  q+E+d++ Lkr+ ++l++en rL++e +eLr
  PSME_00013876-RA 162 KKKPRLSKGQYALLEESFSNNRLPTVNQRHDLATELKLPLHQVEVWFQNKRARTKFNQTEMDFKLLKRHNETLVTENIRLQQELQELR 249
                       5999**************666666789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.39158218IPR001356Homeobox domain
SuperFamilySSF466892.52E-16159219IPR009057Homeodomain-like
SMARTSM003895.8E-12160222IPR001356Homeobox domain
CDDcd000861.16E-11162216No hitNo description
Gene3DG3DSA:1.10.10.603.3E-16162216IPR009057Homeodomain-like
PfamPF000467.2E-15162216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003409.0E-12218261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDQDCDTELR LGLNISSARA SRTQDLECAS QRAVQGSSLQ LNLGSSAVLP ASGTLPLKKT  60
SHGIDGGSDE QRSPGEAKAA FRQVPVSRRF DVNKFLVLSH HNEEATAINV WSSNSTVDTR  120
AISSDSGYGM DFKRMQAAAE ELENDRACSR VHNNVEEAGA TKKKPRLSKG QYALLEESFS  180
NNRLPTVNQR HDLATELKLP LHQVEVWFQN KRARTKFNQT EMDFKLLKRH NETLVTENIR  240
LQQELQELRY LKLASPVVPR ATLIVCPSCH RIAAANNSRP FGWATP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN43e-66A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-27homeobox from Arabidopsis thaliana