PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013877-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 302aa    MW: 32737.9 Da    PI: 8.4934
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013877-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-09189241256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ ++++ q   Lee F   r p++++r++LA++l+ +  qV v FqN+R++ k
  PSME_00013877-RA 189 KKKLRLSEGQYALLEESFS--RLPTENQRQDLARELNPPLHQVEVGFQNKRTRTK 241
                       677789999*********6..689*****************************88 PP
2HD-ZIP_I/II68.61.3e-22189275190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekL.eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk+rls+ q +lLEesF   ++L + +++++lareL+   +qv+v Fqn+R Rtk  ++E+d++ Lkr+ ++l +en rL+++ +eLr +
  PSME_00013877-RA 189 KKKLRLSEGQYALLEESF---SRLpTENQRQDLARELNPPLHQVEVGFQNKRTRTKFNETEMDCKLLKRHNETLITENLRLQQDLQELR-S 275
                       59****************...44515678999********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.9185243IPR001356Homeobox domain
SMARTSM003896.9E-4187247IPR001356Homeobox domain
CDDcd000861.11E-5189241No hitNo description
Gene3DG3DSA:1.10.10.601.2E-9189248IPR009057Homeodomain-like
SuperFamilySSF466893.46E-9189248IPR009057Homeodomain-like
PfamPF000461.1E-6189241IPR001356Homeobox domain
SMARTSM003405.1E-10243286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVQGSSLQLN LGSSAVLPAS GTLSLKKTSA GQGSSLQLNL GSSAVLSASG TLPLKKTSAV  60
QGSSLQLNLG CSAVLPASGT LPLKKTSPET DGGSDEQRSP GEAKAAFRRV PVSRRFDLNK  120
FLVLCHRNEE AAAINLASCK STVDTASAIS SDSGYGMDVK RLQALTEEPE NDRACSRVHN  180
DIEEEGATKK KLRLSEGQYA LLEESFSRLP TENQRQDLAR ELNPPLHQVE VGFQNKRTRT  240
KFNETEMDCK LLKRHNETLI TENLRLQQDL QELRSLKLAS PLVPTGNRHC VPLLSSNCSR  300
EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193TKKKLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN42e-51A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-27HD-ZIP family protein