PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013878-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 217aa    MW: 24755.9 Da    PI: 8.0893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013878-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.8e-1594147356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+ ++++ q   Lee F knr p+ ++r++LA++l+L+  qV v FqN+Ra+ k
  PSME_00013878-RA  94 KKPRLSEGQYALLEESFSKNRLPTDNQRQDLARELNLPLHQVEVGFQNKRARTK 147
                       66679999********************************************98 PP
2HD-ZIP_I/II80.33e-2693181190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk rls+ q +lLEesF++++  + +++++lareL+l  +qv+v Fqn+RARtk  ++E+d++ Lkr+ ++l +en rL++e +eLr +
  PSME_00013878-RA  93 KKKPRLSEGQYALLEESFSKNRLPTDNQRQDLARELNLPLHQVEVGFQNKRARTKFNEMEMDCKLLKRHNETLITENLRLQQELQELR-S 181
                       5999**************77666678899**********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.6989149IPR001356Homeobox domain
SuperFamilySSF466891.2E-1390149IPR009057Homeodomain-like
SMARTSM003896.2E-1091153IPR001356Homeobox domain
CDDcd000862.18E-1093147No hitNo description
PfamPF000461.1E-1293147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-1493147IPR009057Homeodomain-like
SMARTSM003401.1E-9149192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVITREAKAA FRQVPVSRRF DLNKFPVLCH RNEEAAAINL ASSNSTVDTA SAISSDSGYG  60
MDVKRLQAWT EELENDRAYS RVHNDIEEEG ATKKKPRLSE GQYALLEESF SKNRLPTDNQ  120
RQDLARELNL PLHQVEVGFQ NKRARTKFNE MEMDCKLLKR HNETLITENL RLQQELQELR  180
SLKLASPLVP TATLTVWPSC HRIAAGNNSR PLEWATP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN43e-58A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.15e-27Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein