PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013883-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 145aa    MW: 15820.1 Da    PI: 7.1641
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013883-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.66.6e-3612109198
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++r+kC ++Cv+apyfp+e+  kf +vh++ G +nv+kll++lp e+r +a++ +v eA+ rardPv+G++gvi++l++++e+l+++
  PSME_00013883-RA  12 ACAACKMQREKCGENCVVAPYFPQEDLDKFLMVHRVLGKANVIKLLQDLPVEQRGEAVKGIVHEARERARDPVHGCFGVINNLHKKIEELQSK 104
                       7******************************************************************************************** PP

            DUF260  94 lallk 98 
                       la++ 
  PSME_00013883-RA 105 LAAAA 109
                       99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41411112IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3412108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MESMNNTLSK SACAACKMQR EKCGENCVVA PYFPQEDLDK FLMVHRVLGK ANVIKLLQDL  60
PVEQRGEAVK GIVHEARERA RDPVHGCFGV INNLHKKIEE LQSKLAAAAE AGLAANIQSV  120
QHASLISASL NYHEASGVAH EFNNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-291110810107LOB family transfactor Ramosa2.1
5ly0_B1e-291110810107LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027941267.11e-37LOB domain-containing protein 12-like
SwissprotQ9LQR05e-35LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI91e-44B8LQI9_PICSI; Uncharacterized protein
STRINGXP_007142160.14e-36(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-36LOB domain-containing protein 1