PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00013889-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 102aa MW: 11864.8 Da PI: 10.3539

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00013889-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.5	4.7e-08	10	50	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e+ ++F+ + ps + L+k+l+L+ + V +WF+N R+ PSME_00013889-RA 10 ERFCQVFADKELPSMPYKLVLSKQLDLPYQHVHMWFKNARY 50 566689999*******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.588	1	55	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-7	5	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-7	7	57	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-5	10	50	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MSKLPTNAVE RFCQVFADKE LPSMPYKLVL SKQLDLPYQH VHMWFKNARY MSLKKKKLNR 60 LKESAAPVIS TNTRRLKLES SNSTPQIKET DDASNSYLTK ME

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-14	pathogenesis related homeodomain protein A