PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013952-RA
Common NameA, YAB
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family YABBY
Protein Properties Length: 184aa    MW: 20427.8 Da    PI: 7.1755
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013952-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY187.85.4e-58101597170
             YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                       ++++Cyv+C+ C+tilav+vP +sl+++vtvrCGhC +llsvn+a   q l+ + +            + ++++++ ++     s+st ++  
  PSME_00013952-RA  10 PDHLCYVHCDCCSTILAVNVPCNSLHRIVTVRCGHCNNLLSVNMAPLLQSLPQQAQ------------QPSQTTSTYEYPRDPGSSSTAINDG 90 
                       89********************************************9999998886............2223333333444444444444444 PP

             YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        l + +d++ +r+p   r Pek+qrvPsaynrfi++eiqrikasnP+i+h+eafsaaaknWahfP+ihfgl
  PSME_00013952-RA  91 VLISYSDNDEARIP--YRQPEKKQRVPSAYNRFIRDEIQRIKASNPKITHKEAFSAAAKNWAHFPHIHFGL 159
                       44333344444444..599**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.0E-6610159IPR006780YABBY protein
SuperFamilySSF470952.09E-7101152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.6E-4107151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSTSGFEGGP DHLCYVHCDC CSTILAVNVP CNSLHRIVTV RCGHCNNLLS VNMAPLLQSL  60
PQQAQQPSQT TSTYEYPRDP GSSSTAINDG VLISYSDNDE ARIPYRQPEK KQRVPSAYNR  120
FIRDEIQRIK ASNPKITHKE AFSAAAKNWA HFPHIHFGLM LDNRRQANSE DGGDVLNAEA  180
LCNN
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8715760.0LN871576.1 Pseudotsuga menziesii mRNA for YABBY transcription factor (YAB A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020255937.13e-63axial regulator YABBY 5-like isoform X2
SwissprotQ8GW464e-59YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A140KQD81e-136A0A140KQD8_PSEMZ; YABBY transcription factor
STRINGXP_010247851.13e-62(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-56YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]
  2. Finet C, et al.
    Evolution of the YABBY gene family in seed plants.
    Evol. Dev., 2016 Mar-Apr. 18(2): p. 116-26
    [PMID:26763689]