PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00013978-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 1396aa MW: 161719 Da PI: 3.2782

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00013978-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.9	1.3e-13	356	385	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fhel efDe+krsCr+rLa+hnerrrk+q+ PSME_00013978-RA 356 FHELIEFDEGKRSCRHRLAGHNERRRKSQP 385 9**************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.226.10	4.0E-13	96	157	IPR029045	ClpP/crotonase-like domain
SuperFamily	SSF52096	8.95E-10	96	157	IPR029045	ClpP/crotonase-like domain
PRINTS	PR00127	7.2E-5	99	114	IPR001907	ATP-dependent Clp protease proteolytic subunit
Pfam	PF00574	8.4E-12	99	155	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA
PRINTS	PR00127	7.2E-5	139	159	IPR001907	ATP-dependent Clp protease proteolytic subunit
PROSITE profile	PS51141	11.973	299	383	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-10	355	388	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-6	356	382	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0004252	Molecular Function	serine-type endopeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 1396 aa Download sequence Send to blast
METCASAVPT IPSRGLTKQY LNPSCPSIQL AIFNKNSLST PPYYSVCACT SASHLGSRQR 60 AQAVKPINAL GSSRGSLSPS MDSVGTSSNL WMPRLEDLDT TNMLLRQRIV FLGSQVDDVS 120 ADFIISQIFL LDLEDSTKDI KLFINSLGAS VTAVTYLFIS FIDDSDTSFP SMFLIRLFFQ 180 RRKLPADLKE GVLNAKSCDT SVYSFKSKDP WFLLQGWRAF YIKWQIEMVE RAVSVVELVK 240 QSARYESLEV GDYQRAMELL KKTEMGFKDV QLYLLTPKHS VIVNLIGLHY CLVWLGIQSE 300 YVKAALCKNQ ISNMNVCLRW WILGQWVNGF RRGDEMNVCI ASLIKLLEPE QEQFLFHELI 360 EFDEGKRSCR HRLAGHNERR RKSQPDQLGI NSARLLPSFH DDDDDDDDDD DDDDDDEDDD 420 VDADEDDDDV DDDDDDDDDD EDDDDLLMMT MMIMIMIMMI MVMKTMMMNI MVMMITDEEY 480 QHNGDEEDVD DDDGYEEDHD HGDEEDHDHG DEDDDDEHDD DDDDDDNDHD DDDYDDHDHD 540 YEDDDDDDDD DYDYDGYDDD DEHDDGDDDD DGDEDDDDEH DDDDDDEHDD GDDDEHDDGA 600 TDDEEDDDDE DDDEDDDDDD HNDDYDDDDD GADDDDDVDD DHDDDADHGD EYDDDDHGDE 660 DDDDEHDDDD DDDDDDQHED NDHDDDDYGD HDHDDEDDDD QHDVDEEDDD DYDGYDDGYD 720 VVVDDDDGHD DDDHGDDEHD DDDDDDDDDD DEDDDDQHDD DDDDDYDGYD DDDDDDDDEH 780 DNGGDDDHGD EDDDDEHDDD DDNDEHDDGD DDDHGDEDDD DGDDDEHDDG ATTDEHDDDD 840 DEYDDDHDHD HDDDYHDDGY DDVDDDDDGH DDDDDHGDEE DDDEHDDDDD DDNDHDDDHD 900 YDDDDYDDHD HDDEDDDDQH DDDDDDDYDD DCYAADDDDD DNDEHDDGDD DEHDDGDDDD 960 DNDHDYDDED EHDDDDDNDH DDDDDHDDED DDNEEEDDDD DEHHYDEDDD DEHRDNAAAD 1020 DDDDYDDDDD DGHDNDDDDY DDYDDDDDDD DNDDDDYDDD DDDNDDEYDD DDDDDDDDDD 1080 DDHDDEDDGD QHDDDEDDDD GDQHDDDEDD DDDDEHHDPE DDDDDNDDDD DDDVDDEGHD 1140 DEDDDDQHGD DEEEDDDDDD DDDEHDDGDD DEHDDHDHDD DDNDHDSYEE DDDNDDDDDD 1200 YDDHDHDDED DDDQHDDDDD DDDDYDGYDD AAAAAAADDD DNEHDDDDDD DDEHHDDEHD 1260 DVDDEDDDDE HSDNDDDDDD DDDDEDDDDD DDDDDDDHDD EDDDDQHDDE DNDDQHNDGD 1320 DDEDDDDKHH DLQDDDDDDD DDDDDDDDDD EDDDDDDQHD DDDDEDDGDD GDDDDEHHGD 1380 EYDDNDHEGH DDDDDQ

Sequence ? help Back to Top

Protein Sequence Length: 1396 aa Download sequence Send to blast

METCASAVPT IPSRGLTKQY LNPSCPSIQL AIFNKNSLST PPYYSVCACT SASHLGSRQR  60
AQAVKPINAL GSSRGSLSPS MDSVGTSSNL WMPRLEDLDT TNMLLRQRIV FLGSQVDDVS  120
ADFIISQIFL LDLEDSTKDI KLFINSLGAS VTAVTYLFIS FIDDSDTSFP SMFLIRLFFQ  180
RRKLPADLKE GVLNAKSCDT SVYSFKSKDP WFLLQGWRAF YIKWQIEMVE RAVSVVELVK  240
QSARYESLEV GDYQRAMELL KKTEMGFKDV QLYLLTPKHS VIVNLIGLHY CLVWLGIQSE  300
YVKAALCKNQ ISNMNVCLRW WILGQWVNGF RRGDEMNVCI ASLIKLLEPE QEQFLFHELI  360
EFDEGKRSCR HRLAGHNERR RKSQPDQLGI NSARLLPSFH DDDDDDDDDD DDDDDDEDDD  420
VDADEDDDDV DDDDDDDDDD EDDDDLLMMT MMIMIMIMMI MVMKTMMMNI MVMMITDEEY  480
QHNGDEEDVD DDDGYEEDHD HGDEEDHDHG DEDDDDEHDD DDDDDDNDHD DDDYDDHDHD  540
YEDDDDDDDD DYDYDGYDDD DEHDDGDDDD DGDEDDDDEH DDDDDDEHDD GDDDEHDDGA  600
TDDEEDDDDE DDDEDDDDDD HNDDYDDDDD GADDDDDVDD DHDDDADHGD EYDDDDHGDE  660
DDDDEHDDDD DDDDDDQHED NDHDDDDYGD HDHDDEDDDD QHDVDEEDDD DYDGYDDGYD  720
VVVDDDDGHD DDDHGDDEHD DDDDDDDDDD DEDDDDQHDD DDDDDYDGYD DDDDDDDDEH  780
DNGGDDDHGD EDDDDEHDDD DDNDEHDDGD DDDHGDEDDD DGDDDEHDDG ATTDEHDDDD  840
DEYDDDHDHD HDDDYHDDGY DDVDDDDDGH DDDDDHGDEE DDDEHDDDDD DDNDHDDDHD  900
YDDDDYDDHD HDDEDDDDQH DDDDDDDYDD DCYAADDDDD DNDEHDDGDD DEHDDGDDDD  960
DNDHDYDDED EHDDDDDNDH DDDDDHDDED DDNEEEDDDD DEHHYDEDDD DEHRDNAAAD  1020
DDDDYDDDDD DGHDNDDDDY DDYDDDDDDD DNDDDDYDDD DDDNDDEYDD DDDDDDDDDD  1080
DDHDDEDDGD QHDDDEDDDD GDQHDDDEDD DDDDEHHDPE DDDDDNDDDD DDDVDDEGHD  1140
DEDDDDQHGD DEEEDDDDDD DDDEHDDGDD DEHDDHDHDD DDNDHDSYEE DDDNDDDDDD  1200
YDDHDHDDED DDDQHDDDDD DDDDYDGYDD AAAAAAADDD DNEHDDDDDD DDEHHDDEHD  1260
DVDDEDDDDE HSDNDDDDDD DDDDEDDDDD DDDDDDDHDD EDDDDQHDDE DNDDQHNDGD  1320
DDEDDDDKHH DLQDDDDDDD DDDDDDDDDD EDDDDDDQHD DDDDEDDGDD GDDDDEHHGD  1380
EYDDNDHEGH DDDDDQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	7e-12	squamosa promoter binding protein-like 5