PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014015-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 414aa    MW: 45610.9 Da    PI: 9.8411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014015-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11225270454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + ErrRR++++++fe Lr+++P+       K +Ka+iL  + eY+ sL
  PSME_00014015-RA 225 HHMISERRRREKLKESFEALRSVIPPG-----SKKDKASILFSTREYLTSL 270
                       68899********************95.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.78221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16223292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-12223275No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16225290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9225270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTVARIQVQS DEQNQFRIRS LLASIIVSPI ISVPMPTPAT SISTSPSRSS LLSRSIDTSG  60
SSSMVSYLQY PTISRGDQIN MPQDTHQYSS STSELAGGFY PYNLQTLQLP LPSWLSISGH  120
DHAETTLVYP GSSRQINVPG LQLFPQTSQL GDFLVAPSAR NMMLSAFGMW KPPSKVLTPP  180
MVEGQYRLKR CLAILKNILA ERVGQSSMSG SYRPPGETIS GSQVHHMISE RRRREKLKES  240
FEALRSVIPP GSKKDKASIL FSTREYLTSL KSHVEELEER NKQLESELNK PKRARAQSQS  300
QEGAGTSSVV QQQGSTTTED GDSVVTVKVS KIGAGNSNRM GMGLVVVVDR PTNTIDLTIA  360
VLRRLREMGV PLISMATSTT HDDHDPSRPQ FRMSATIELQ DEVRNIVLNP PLYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234ERRRRE
2230235RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-11bHLH family protein