PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014050-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 71aa    MW: 8176.36 Da    PI: 10.104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014050-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-082155134
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkg 34
                      +g W++eEd++l+ ++ + G    +W+ +a+  g +
  PSME_00014050-RA 21 KGLWSPEEDDKLISYIIKNGLLgrSWSYVAKQAG-N 55
                      678*****************7788********99.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.48E-61654IPR009057Homeodomain-like
PROSITE profilePS512949.9171665IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-91955IPR009057Homeodomain-like
PfamPF002491.1E-52155IPR001005SANT/Myb domain
CDDcd001670.004062455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MKRAERHGQG APFPSKPELR KGLWSPEEDD KLISYIIKNG LLGRSWSYVA KQAGNYLNTH  60
IHSFLNHIIP Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.22e-11myb domain protein 55