PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014153-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 178aa MW: 19622.2 Da PI: 6.3808

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014153-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.9	6.8e-19	2	68	35	101
DUF260 35 klFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 k+FGasnv+kll +lp +r +a+ ++ yeA+ar++d yG+v++i++lqqq+++l++ela ++++l PSME_00014153-RA 2 KIFGASNVSKLLLHLPMPDRCEAVVTISYEAQARLQDQFYGCVAHIFTLQQQVASLQVELAFVQAQL 68 8*************************************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.497	1	68	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-17	2	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKIFGASNVS KLLLHLPMPD RCEAVVTISY EAQARLQDQF YGCVAHIFTL QQQVASLQVE 60 LAFVQAQLAS CVSYGSASIS ANHPVISSSS YSQHLQFPAH LSLPCQPIPH PYNALLSRVK 120 EKNSYGFATY MDYNFSVSPS DSSSPLMEVL QRCRSLEENE GEDNGDLQAL AHALLRRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-14	2	88	45	131	LOB family transfactor Ramosa2.1
5ly0_B	2e-14	2	88	45	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390481.1	8e-34	uncharacterized protein LOC112289471
TrEMBL	D5A9D3	2e-77	D5A9D3_PICSI; Uncharacterized protein
STRING	PP1S261_2V6.1	5e-34	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	8e-30	lateral organ boundaries-domain 29