PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014171-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 122aa    MW: 13854.1 Da    PI: 5.6805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014171-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-076688123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C  Cgk Fs++s+Lk H + H
  PSME_00014171-RA 66 HNCLECGKIFSTPSSLKDHRNEH 88
                      67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-65788No hitNo description
Gene3DG3DSA:3.30.160.609.8E-76388IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496689IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSLMKGSETQ ERVMAFRLLV ASTPGSGVTF EFMSIPWQEL AMSQIEKVEK ILEETKKMLF  60
LNEKVHNCLE CGKIFSTPSS LKDHRNEHSL SILNISQVLN KVKEVGVENI IDVIVIEYPQ  120
NT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099232e-79BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A388JQ035e-20A0A388JQ03_CHABU; Uncharacterized protein
TrEMBLA0A388JQ165e-20A0A388JQ16_CHABU; Uncharacterized protein