PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014180-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 141aa    MW: 16399.2 Da    PI: 9.9974
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014180-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.81.3e-111666954
                      HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox  9 keqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      ++  ++L   Fe+ + +ps++e++ ++++l    ++++++V++WF Nr+++
  PSME_00014180-RA 16 QKNRRILIPKFESgTVKPSRHEIKTITAQLqefgQVEDANVFYWFGNRKYR 66
                      6677899999**99***********************************98 PP
2Wus_type_Homeobox61.12.5e-2016661060
  Wus_type_Homeobox 10 peQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       ++  +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00014180-RA 16 QKNRRILIPKFESGTVKPSRHEIKTITAQLQEFGQVEDANVFYWFGNRKYR 66
                       5556788899***************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.13E-61570IPR009057Homeodomain-like
PfamPF000463.4E-91666IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MRKGAGMKQS RGGNQQKNRR ILIPKFESGT VKPSRHEIKT ITAQLQEFGQ VEDANVFYWF  60
GNRKYRIFNR VERTEKNTKA IINVANNTAD SLYNTGESYS SYVLEDPFFT QDDPFFTHHH  120
NPFFIHQDSG GFPYANESRN K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH96e-22D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-15homeobox-3