PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014182-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 255aa    MW: 29804.9 Da    PI: 6.0957
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014182-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.81.2e-1559116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++tkeq ++L   Fe+   +ps++e++ ++++l    ++++++V++WF Nr+++
  PSME_00014182-RA  59 KPRWKPTKEQKRILIPKFESgMVKPSRHEIKTITAQLqefgQVEDANVFYWFRNRKYR 116
                       89*****************99***********************************98 PP
2Wus_type_Homeobox79.93.4e-2658116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWF Nrk R
   PSME_00014182-RA  58 TKPRWKPTKEQKRILIPKFESGMVKPSRHEIKTITAQLQEFGQVEDANVFYWFRNRKYR 116
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.25E-955120IPR009057Homeodomain-like
PROSITE profilePS500719.34555120IPR001356Homeobox domain
SMARTSM003899.5E-457124IPR001356Homeobox domain
PfamPF000463.0E-1359116IPR001356Homeobox domain
CDDcd000862.49E-459116No hitNo description
Gene3DG3DSA:1.10.10.602.9E-559116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDNMKSKPRQ SWTSMFKVKP STSDNQGYGS SNSSAISVQR PCYEGTSSAN EERSWHKTKP  60
RWKPTKEQKR ILIPKFESGM VKPSRHEIKT ITAQLQEFGQ VEDANVFYWF RNRKYRIFNR  120
VERTEKNTKA IINIANNTAD SLYNTGESYS SYVLEDPFFT QDDPFFTHQD RFFHTGEWYS  180
SYDPFFTQDD PFFTHHDNPF FIHQEDFHMQ MNEEMSNDQC SSMQAVATAA GVFNEGTFAD  240
TTGTIFSYLI SQFDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH99e-59D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-22homeobox-3