PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014183-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 154aa    MW: 18134.2 Da    PI: 10.1702
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014183-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.3e-161774254
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      ++R+++tkeq ++L   Fe+   +ps++e++ ++++l    ++++ +V++WF+Nr+++
  PSME_00014183-RA 17 KPRWKPTKEQKRILIPKFESgMVKPSRHEIKTITAQLqefgQVEDGNVFYWFHNRKYR 74
                      89*****************99***********************************98 PP
2Wus_type_Homeobox79.25.6e-261674260
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       +++RW Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed NVfyWF Nrk R
   PSME_00014183-RA 16 TKPRWKPTKEQKRILIPKFESGMVKPSRHEIKTITAQLQEFGQVEDGNVFYWFHNRKYR 74
                       689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-91375IPR009057Homeodomain-like
PROSITE profilePS500718.9891378IPR001356Homeobox domain
SMARTSM003890.00121582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-51774IPR009057Homeodomain-like
CDDcd000860.001641774No hitNo description
PfamPF000461.5E-131774IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDGTSSANKE RSWHKTKPRW KPTKEQKRIL IPKFESGMVK PSRHEIKTIT AQLQEFGQVE  60
DGNVFYWFHN RKYRIFNPVE RTEKNTKAII NVANNTADSL YNTGQSYSSY VLEDPFFTQD  120
DPFFTHQDRF FHTGSIFHTG RSIFHTSRQS ISHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH97e-31D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
STRINGGorai.011G031300.13e-19(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-21homeobox-3