PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014240-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 312aa    MW: 36280.3 Da    PI: 6.0774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014240-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.22.6e-43211473128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrF Pt++elv +yLkk++++++ l+l+ +i+++d+y+++Pw+Lp  + +a+ek+w+fF++r++k++   r+nr t sgyWkatg+d++v 
  PSME_00014240-RA  21 PGFRFYPTEQELVGFYLKKRAQRDHpLNLDIIIPTLDLYQYDPWQLPgLANDAGEKQWFFFVPRESKKS-CPRPNRLTVSGYWKATGSDRTVR 112
                       9*******************998875777667***************656677999********99986.58********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ + +g kk+Lvfykg+ap g++t+W+m+eyr+
  PSME_00014240-RA 113 NERLQCIGQKKILVFYKGKAPLGQRTEWIMNEYRM 147
                       *999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4515168IPR003441NAC domain
PROSITE profilePS5100548.85419168IPR003441NAC domain
PfamPF023655.8E-2321147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQLEELYYND GRVQGDFKEF PGFRFYPTEQ ELVGFYLKKR AQRDHPLNLD IIIPTLDLYQ  60
YDPWQLPGLA NDAGEKQWFF FVPRESKKSC PRPNRLTVSG YWKATGSDRT VRNERLQCIG  120
QKKILVFYKG KAPLGQRTEW IMNEYRMPDF RSSPHKIKDV VLCRIYRKAV SQKSMEQGAM  180
PNYVEGEEAE VVSRDEYEEK SHSINCSTVH GSFQISNPMT ETEVSSLRYN ENQKAVCPSA  240
LGNTNEEEAS LFEFLEPILF YEETMESKNQ KAYKLPAQLE LPKLSMDYLF SQPIASPYSL  300
LSLPSMFHIP LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-422117119168NO APICAL MERISTEM PROTEIN
1ut4_B3e-422117119168NO APICAL MERISTEM PROTEIN
1ut7_A3e-422117119168NO APICAL MERISTEM PROTEIN
1ut7_B3e-422117119168NO APICAL MERISTEM PROTEIN
4dul_A3e-422117119168NAC domain-containing protein 19
4dul_B3e-422117119168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941405.14e-55NAC domain-containing protein 22
TrEMBLA0A075M5N51e-134A0A075M5N5_9SPER; NAC domain protein
STRINGXP_008791987.16e-54(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.16e-53NAC domain containing protein 35