PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014294-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 309aa    MW: 34902.4 Da    PI: 8.4922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014294-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-15147197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g+++AeIrd    g + +r++l +f taeeAa a+++a++  +g
  PSME_00014294-RA 147 RYRGLRRRS-WGKFAAEIRDS---GrRGARVWLRTFKTAEEAAMAYDKAALLNRG 197
                       8*****887.**********4...5444**********************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-25146206No hitNo description
Gene3DG3DSA:3.30.730.103.8E-26147205IPR001471AP2/ERF domain
PROSITE profilePS5103221.167147205IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-19147207IPR016177DNA-binding domain
SMARTSM003805.9E-27147211IPR001471AP2/ERF domain
PfamPF008472.0E-9147193IPR001471AP2/ERF domain
PRINTSPR003671.9E-8148159IPR001471AP2/ERF domain
PRINTSPR003671.9E-8171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALETTSPNN AEGSFQHEHG PVVSAERLLE DVWAHFIAAR KSDQPIHDGM QPANHTKEES  60
CCNVEDQDQD QVQYPLLLPL KENDSEDMIL FQLLNEPVAN LGWTAIHNQQ EMAIPGATRS  120
TAYTPAICNT KMTRAQGEAA EKPSTKRYRG LRRRSWGKFA AEIRDSGRRG ARVWLRTFKT  180
AEEAAMAYDK AALLNRGTRA SLNFPIEIVT NALADTTQKW CSKLISSRQK QKQKHIKVSH  240
HHIELRKKMD APDARSTIGV DFSKDDGMSS MSHKIRSSDD IHRVDFVLES PPPEKRFICS  300
AADWLTKQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23146208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-22ethylene responsive element binding factor 1