PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014383-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 221aa    MW: 25065 Da    PI: 4.9924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014383-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.3e-142675255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+e+r p++   r++ +lg++  a++Aa+a++aa  +l+g
  PSME_00014383-RA 26 QFKGIRLRK-WGSWVSEVRMPRS---RAKLWLGSYPNAQQAARAYDAAVFCLRG 75
                      69*****99.**********854...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-262584IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-162684IPR016177DNA-binding domain
CDDcd000181.05E-232684No hitNo description
PROSITE profilePS5103220.1782683IPR001471AP2/ERF domain
SMARTSM003804.8E-252689IPR001471AP2/ERF domain
PRINTSPR003672.9E-92738IPR001471AP2/ERF domain
PfamPF008471.1E-82775IPR001471AP2/ERF domain
PRINTSPR003672.9E-96585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEKASTQEHG RAHAREDEDH GQKCRQFKGI RLRKWGSWVS EVRMPRSRAK LWLGSYPNAQ  60
QAARAYDAAV FCLRGSKAKF NFPDCVPDIP SASSLSRHQI QVAAAKYALD QLPSSPPCVH  120
NINNKATEEP LSPPRLASVS ETELSSDSHH ILEEHELQDM WECLFEESDN SNDGCQLLGL  180
NLERMPSIDD VLALELNPIT NWQDEQQINN IIDTTELWNF L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S1PRQ71e-62A0A2S1PRQ7_9SPER; Dehydration-responsive element binding transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-25ERF family protein