PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014389-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 342aa    MW: 38920.8 Da    PI: 5.2274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014389-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-1987140356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t eq+++Le+ Fe  ++++ e++ +LAk lgL  rq++vWFqNrRa++k
  PSME_00014389-RA  87 KKRRLTFEQVKTLEKSFEVRNKLDPERKMQLAKALGLHPRQISVWFQNRRARWK 140
                       4557899**********************************************9 PP
2HD-ZIP_I/II119.12.3e-3886178193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrl+ eqvk+LE+sFe ++kL+perK++la++Lgl+prq+ vWFqnrRAR+ktkq+E+d+++Lk+ y++l+++ ++L +++++ ++e+++
  PSME_00014389-RA  86 EKKRRLTFEQVKTLEKSFEVRNKLDPERKMQLAKALGLHPRQISVWFQNRRARWKTKQMERDFDVLKHDYETLRSDYDKLLQKNRQFKAEVQQ 178
                       69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2080144IPR009057Homeodomain-like
SMARTSM003894.4E-1885146IPR001356Homeobox domain
PROSITE profilePS5007116.89286142IPR001356Homeobox domain
CDDcd000862.89E-1787143No hitNo description
PfamPF000464.6E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-2089149IPR009057Homeodomain-like
PRINTSPR000311.7E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5122138IPR000047Helix-turn-helix motif
PfamPF021834.8E-12142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSCDGRPFRS SNSAMITEDQ SPKAMADMIA SCTSVGIQGT GYLTSNECEN TRKRSMSSSS  60
YIGAMYVSDN EFGEEDGSDE CLHFGEKKRR LTFEQVKTLE KSFEVRNKLD PERKMQLAKA  120
LGLHPRQISV WFQNRRARWK TKQMERDFDV LKHDYETLRS DYDKLLQKNR QFKAEVQQLS  180
RELEKKDWSS KIKVSEIKSE QRSANSVPKI TNSPMELSIK SEICIDCTEQ PRHNYPTSNK  240
EQEGLCCSYM TEVASSIFSI DSPRTIESPQ SSGVPQMAER SVEGSSLVGE VAVNDLKTPP  300
PGTLPEWHCL PKVEMDQCGS EDSWCNMLYS LEEQGALMLC EY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQH81e-156A9NQH8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-43HD-ZIP family protein