PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014391-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 314aa MW: 35966.4 Da PI: 4.8949

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014391-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	42	95	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q+++Le+ Fe ++++ +++ eLAk lgL+ r+++vWFqNrRa++k PSME_00014391-RA 42 KKRKLTFHQVKALEKSFELRNKLDPDQKMELAKTLGLQPRKISVWFQNRRARWK 95 4568999**********************************************9 PP
2	HD-ZIP_I/II	111.8	4.5e-36	42	132	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l+ +qvk+LE+sFe ++kL+p++K+ela++Lglqpr++ vWFqnrRAR+k kq+E+d++aLk++yd+lk++ + L +++++ ++el PSME_00014391-RA 42 KKRKLTFHQVKALEKSFELRNKLDPDQKMELAKTLGLQPRKISVWFQNRRARWKIKQMENDFDALKQEYDNLKRNYDILLQQNRQFKAELV 132 9************************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.98E-18	37	98	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-16	40	101	IPR001356	Homeobox domain
PROSITE profile	PS50071	15.969	42	97	IPR001356	Homeobox domain
Pfam	PF00046	9.7E-16	42	95	IPR001356	Homeobox domain
CDD	cd00086	2.49E-15	42	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-19	48	95	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	68	77	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	77	93	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-9	97	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MECESTRKES MSSSSYLGGM YMSKHDIEEE DGSDEFLHFG DKKRKLTFHQ VKALEKSFEL 60 RNKLDPDQKM ELAKTLGLQP RKISVWFQNR RARWKIKQME NDFDALKQEY DNLKRNYDIL 120 LQQNRQFKAE LVQRQGKELE KTDGSSNVRA SEIEPQQNSV NSVPMIANLP MELSVKSNIY 180 RDCTEKLQPD NYPTATTEHE GESSSIMTEA DQGSIFNINC PRMMEISELL GVPQMATAAA 240 NRSSPVLVVE GSSAGQQVPA DGLKTTLQGL HEWHCQPKVE VDQISAEERQ CNLFYSLEDQ 300 GALMLYEYWH LPAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	RRARWKIKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NQH8	1e-125	A9NQH8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-37	HD-ZIP family protein