PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014620-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LSD
Protein Properties Length: 151aa    MW: 16666.5 Da    PI: 4.585
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014620-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD125.52.2e-08135151117
           zf-LSD1   1 CggCrtlLsYPrGApsV 17 
                       C+gCrtlL YP GAp+V
  PSME_00014620-RA 135 CSGCRTLLVYPQGAPNV 151
                       ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-8132151IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-7135151IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDRGFSYIEH FPLKRVSIGP EFQAEIHVWN GPPKQSQTQT INEDSNFNEN MDDSRGIQNR  60
VIPDNIDSDD DESEMGSVDN SNIQKSKVSG TKSKMCMPRT KYSGNESSNG ACCINTQNCE  120
LVPLPPPNVQ GQLVCSGCRT LLVYPQGAPN V
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1170733e-57BT117073.1 Picea glauca clone GQ03812_E19 mRNA sequence.