PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014663-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 257aa    MW: 28861.5 Da    PI: 5.1052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014663-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-0966109755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + Er+RR+++N+ + +Lr+++Pk +      K++K +i   A+ Y+ +Lq
  PSME_00014663-RA  66 QSERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIGDAISYVVDLQ 109
                       57*********************66......**************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.21559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-861113No hitNo description
SuperFamilySSF474591.44E-1463126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-965114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-766109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1366123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDIGLQDAGE IFNADCYEDQ NNKLWIDNMD EISGQLDWDD SDPEIMAGSK RATKSNYLQA  60
TSKNLQSERK RRKKLNDTLY TLRSVVPKIS KMDKQSIIGD AISYVVDLQK KTREIEGEIE  120
GLCRSNKGDY QTQNTPQMIN PPTDANCELR KRSTDSGEPK KSVEKLKHGK VLQVEICNAG  180
EGGIYHVRIE GKKEPGGLMK LTRALESLPL QIMNSNICCF DEAIHYSLTV NAKSLGTADS  240
DKLEDMIRET TTSNCFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785710.0EF678571.1 Picea sitchensis clone WS02928_G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-153B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.15e-25bHLH family protein