PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014838-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 379aa    MW: 43031.8 Da    PI: 6.824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014838-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-191360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+lv++v+ +G g+W+t+++  g+ R++k+c++rw +yl
  PSME_00014838-RA 13 RGLWSPEEDEKLVRYVATHGHGCWSTVPKQAGLQRCGKSCRLRWINYL 60
                      788*******************************************97 PP
2Myb_DNA-binding51.72e-1666109146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E+  ++da++ lG++ W+ I+r+++ gRt++++k++w++
  PSME_00014838-RA  66 RGSFSPQEERTIIDAHRVLGNR-WAQISRHLP-GRTDNEVKNFWNS 109
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-27563IPR009057Homeodomain-like
PROSITE profilePS5129425.551864IPR017930Myb domain
SuperFamilySSF466891.91E-2910107IPR009057Homeodomain-like
SMARTSM007172.8E-141262IPR001005SANT/Myb domain
PfamPF002495.7E-171360IPR001005SANT/Myb domain
CDDcd001676.49E-121660No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2464115IPR009057Homeodomain-like
SMARTSM007173.9E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129420.70565115IPR017930Myb domain
PfamPF002491.9E-1466109IPR001005SANT/Myb domain
CDDcd001671.28E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGHRCCSKQK VKRGLWSPEE DEKLVRYVAT HGHGCWSTVP KQAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS PQEERTIIDA HRVLGNRWAQ ISRHLPGRTD NEVKNFWNSC MRKKLLAQGI  120
DPKTHRPISE LEKHEHKPST WSSEPSSGFR DSSCRPNSDL ELGEAMTEGI MYTTDAVRGE  180
NLGLASYGLV PVNGGIERYP SLYEQGQTLQ EDVNFQLSFA KKDERDGNLN GNSETKFHAQ  240
ANDGNSEISR FEEKPYFSFD QTLSAHCIEQ LEIGSSSYES DHPLIRPVNE LEAAAMRFNA  300
DHHHMNPPNL EAHTKPMHLP KVNENEFNSQ QLQASNYHQY QNQYLISYSS SASSAYGEHN  360
LDADLSLHSS IPIGIYFGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131157108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162731e-152BT116273.1 Picea glauca clone GQ03715_B15 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-77myb domain protein 67