PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014950-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 161aa    MW: 18054.5 Da    PI: 5.5776
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014950-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.4e-38111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaa k++r+kC ++Cv+apyfp+e+  kf  vh++FG +nv+kll++lp e+r +a++s+vyeA+ r+rdPv+G++gvi++l++++e+l+++
  PSME_00014950-RA  11 ACAARKMQRKKCGENCVIAPYFPQEDLDKFLLVHRVFGKANVTKLLQDLPVEQRVEAVKSIVYEARERVRDPVHGCFGVINDLHKKIEELQSK 103
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00014950-RA 104 LAAAEAE 110
                       *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.10310111IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3611108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNMSSTLPTA ACAARKMQRK KCGENCVIAP YFPQEDLDKF LLVHRVFGKA NVTKLLQDLP  60
VEQRVEAVKS IVYEARERVR DPVHGCFGVI NDLHKKIEEL QSKLAAAEAE AGLAANIQSL  120
TTLYYHEASE AAHEFNNASL HDLYDDVDPL QLWEPLWTSS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-321011010110LOB family transfactor Ramosa2.1
5ly0_B2e-321011010110LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253003.11e-40PREDICTED: LOB domain-containing protein 1-like
TrEMBLB8LQI92e-51B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-38LOB domain-containing protein 1