PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014966-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 227aa    MW: 26581.3 Da    PI: 6.2904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014966-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-0867118255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +   +E+ RR+r++    +L +llP    +p++Kl+     e+A++YIk+L+
  PSME_00014966-RA  67 RGSQVVAEQLRRKRMKYLCTQLESLLPMT--TPAPKLDRCGLYEEAINYIKKLE 118
                       5666789*********************6..4*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.97965117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-667118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-767122No hitNo description
SuperFamilySSF474596.15E-1168132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-671123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1071135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAFHGLLSYS DSSNSNGQQY CTPQLDCQVL ASRKRPFGVD LDSQEFDDLQ EIVWRDVDQM  60
MKVTTSRGSQ VVAEQLRRKR MKYLCTQLES LLPMTTPAPK LDRCGLYEEA INYIKKLEED  120
LRQLKRKRDR LLAIQSEKTA NKNIELKVDV EIYDREAIIS ITGQRRPRYL WKILEELETH  180
GLDVETSQLF TGESFVFLYF HVNFRDNVSN NPDQIRSSLE CRLILTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114127KKLEEDLRQLKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-100A9NYK8_PICSI; Uncharacterized protein