PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015085-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 410aa MW: 44344.1 Da PI: 6.8456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015085-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	350	375	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er R+ri +++ L+el+P++ PSME_00015085-RA 350 HSIAERLHRARIAEKMKALQELVPNS 375 99**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.09E-5	343	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-4	347	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MFRGRISSRQ DILDSLVNFL VDMQPSTSLL GTGPMQSVSS VTSCLSSSPE VTLQEQMHSQ 60 QQQINSQQQH FSSQFDQTNQ PHQNMEDFLE QMFLMPSWSD VAVKIAPWEF NPVNASQGNN 120 ASNNNNSPQN LQSNTQRLFT MPLLPSGIGG QGLNSQENEG HASEHMQYSN YDESQFLASK 180 LRQHPLSGNS SMNQTPNQLS TGNATASQLL ASMGNSPHST AVMTRSPNTG GSCNGSDGGM 240 LPLPLSLGQV GKSGEMNETQ SRDEIEASFK SANNARDSNL GGLFPPFPGS PRVVRPPGQN 300 FHPQSGQVPM QGYGGMPQPQ HHNPPPTGVG VAPPVRPRVR ARRGQATDPH SIAERLHRAR 360 IAEKMKALQE LVPNSNKVFD FSAGGLVVFG NNVHGNSPDL MPTLASGYYC

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MFRGRISSRQ DILDSLVNFL VDMQPSTSLL GTGPMQSVSS VTSCLSSSPE VTLQEQMHSQ  60
QQQINSQQQH FSSQFDQTNQ PHQNMEDFLE QMFLMPSWSD VAVKIAPWEF NPVNASQGNN  120
ASNNNNSPQN LQSNTQRLFT MPLLPSGIGG QGLNSQENEG HASEHMQYSN YDESQFLASK  180
LRQHPLSGNS SMNQTPNQLS TGNATASQLL ASMGNSPHST AVMTRSPNTG GSCNGSDGGM  240
LPLPLSLGQV GKSGEMNETQ SRDEIEASFK SANNARDSNL GGLFPPFPGS PRVVRPPGQN  300
FHPQSGQVPM QGYGGMPQPQ HHNPPPTGVG VAPPVRPRVR ARRGQATDPH SIAERLHRAR  360
IAEKMKALQE LVPNSNKVFD FSAGGLVVFG NNVHGNSPDL MPTLASGYYC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115043	0.0	BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-12	LJRHL1-like 1