PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015095-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 190aa    MW: 21345.4 Da    PI: 10.4336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015095-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000351311621955
                       HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++  L++l+ +      +K + a++L +A+ YIksLq
  PSME_00015095-RA 131 RITALQQLVSPF-----GKTDTASVLWEAIVYIKSLQ 162
                       677788888777.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.506112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10122176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-4122166No hitNo description
Gene3DG3DSA:4.10.280.102.7E-7122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVFPAALSRI LPSSPSKQPT SRLLTNNKNI PLWNSMSSTP EKIKQPSNAT DRASPLQYHP  60
AQFLQEGKQL NNTAQSLNMP RLDEARDAIN DAKRSSPDSS SSDSIFKRPR LENCNSTLPT  120
FKVRKEKLGY RITALQQLVS PFGKTDTASV LWEAIVYIKS LQEQVQELFC SLRAHKTKLI  180
LSYILLINTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.16e-25bHLH family protein