PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015239-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 735aa    MW: 80028.6 Da    PI: 6.6047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015239-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30356415159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a gC+v+k+v+r+aed +++++tYeg+Hnh+
  PSME_00015239-RA 356 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCMVRKQVQRCAEDMSILITTYEGTHNHP 415
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-32341417IPR003657WRKY domain
SuperFamilySSF1182901.31E-27349417IPR003657WRKY domain
PROSITE profilePS5081129.092351417IPR003657WRKY domain
SMARTSM007742.8E-37356416IPR003657WRKY domain
PfamPF031068.1E-27357415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MAMEADRSGS DVTHFIKRKN RFGFQSRDTN PNPGKKMAME GRLDKVIEID LSINLEAENG  60
EGDHEDLQLD FKTKRLVSPL VYNLDPSEEE ETEVEETSKE LHDNYYYDKP ASSRGPTPVT  120
SWIDGKTKIE ALQIEIGRIK EENENLKTQL SRGVNNYHNL QMHMFSVMQQ RREDIEKLRE  180
QDLQLPRDES QLVALSLGTN PSTKGHSKEE TTESAENRRL QLIENQQIHV RSGSADGGSV  240
ENLKGLTLSL DIKDDETSLE SGERNLPPRS ASPTKSDGGL VRTESLDLSN TERKTCLSPE  300
NSSQLKDENN YQQEGGSWPQ NKTVKTSQEA TKNPEAAPLT RKARVSVRAR CEAPTMNDGC  360
QWRKYGQKIA KGNPCPRAYY RCTVAPGCMV RKQVQRCAED MSILITTYEG THNHPLPIAA  420
TAMASTTSAA ACMLMSGSTS SLEAMNANSY LLGGGNSRMG QFLASNPQIT TSPNSFPSIT  480
FDLTNNPNSQ PNLRLGASGS AGTPLNTASF PSPFRYPSAG PGLISHSSSM MGSDHSLIPP  540
QGSNLWNNNV YYRQPHAYSN HSTLGTKYDL TSQQFQQPAP LIDPSRALQG ALSRSSTQNL  600
MQNIMAEAAA KCNNSSSGSQ HSLADTVGAA TAAITSDPNF TAALANAITS ILSQGSTHSQ  660
SGPSDRTLIS TNGEQLSGPG KWKESMLALF ATVHGAASST RASSHQASQS NIIFSSSFPF  720
STKQWPAATT DNHNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-21347417877Probable WRKY transcription factor 4
2lex_A5e-21347417877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-50WRKY family protein