PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015257-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 372aa MW: 43036.8 Da PI: 4.9942

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015257-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.5e-15	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g+W++ +++ g++R++k+c++rw++yl PSME_00015257-RA 22 RGAWTAKEDTILGEYIQTHGVGQWRSLPKKAGLKRCGKSCRLRWLNYL 69 89********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	78	120	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+ell++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00015257-RA 78 ISPEEEELLIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 120 59***************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.102	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	2.46E-28	20	116	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-11	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-22	23	76	IPR009057	Homeodomain-like
CDD	cd00167	9.60E-8	24	69	No hit	No description
PROSITE profile	PS51294	27.346	70	124	IPR017930	Myb domain
SMART	SM00717	4.3E-17	74	122	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-26	77	124	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-15	78	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-12	79	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MMGRSPNCWS CSKDDDHEGL SRGAWTAKED TILGEYIQTH GVGQWRSLPK KAGLKRCGKS 60 CRLRWLNYLR PDIKHGDISP EEEELLIRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNTHL 120 RKKVEINELE PKTQKPFKSC RDMPSYSYYK EVQAVKDKDN SFSESTPLKT RAVRYCGRVI 180 ADVNNSNNDN YDLMQETHGG INPDEEGLKA ADYHVEEIDT SKSFKDDHVV EIETSKSFKV 240 ADDHVVEIET SKSFQVADDH VVEIDTSKSF KVADDHVVEI DTSKSWCQLL LEDCIGDEKY 300 DRLELIDELQ ANSIVRTQNI RIEHHLPTEF PYPTHNYETH SSYYSSFEDQ EFPDSIYFES 360 FLDLSELPSF LS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MMGRSPNCWS CSKDDDHEGL SRGAWTAKED TILGEYIQTH GVGQWRSLPK KAGLKRCGKS  60
CRLRWLNYLR PDIKHGDISP EEEELLIRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNTHL  120
RKKVEINELE PKTQKPFKSC RDMPSYSYYK EVQAVKDKDN SFSESTPLKT RAVRYCGRVI  180
ADVNNSNNDN YDLMQETHGG INPDEEGLKA ADYHVEEIDT SKSFKDDHVV EIETSKSFKV  240
ADDHVVEIET SKSFQVADDH VVEIDTSKSF KVADDHVVEI DTSKSWCQLL LEDCIGDEKY  300
DRLELIDELQ ANSIVRTQNI RIEHHLPTEF PYPTHNYETH SSYYSSFEDQ EFPDSIYFES  360
FLDLSELPSF LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-24	20	124	25	128	MYB TRANSFORMING PROTEIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-48	myb domain protein 9