PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015260-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 298aa    MW: 33796.4 Da    PI: 4.0652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015260-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-131460248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g+WT+ Ed++l d+++ +G g W++ +r+ g++R +k+c++rw++yl
  PSME_00015260-RA 14 GAWTASEDKILSDYINTYGLGGWTSLPRKAGLKRGGKSCRLRWLNYL 60
                      89*****************************99************97 PP
2Myb_DNA-binding54.62.5e-1766110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ + eE+ell++++++lG++ W++Ia +++ gRt++++k++w+++
  PSME_00015260-RA  66 RGNISSEEEELLIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 110
                       7899******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.802860IPR017877Myb-like domain
SMARTSM007171.1E-91262IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-2613107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-211467IPR009057Homeodomain-like
PfamPF002491.9E-111460IPR001005SANT/Myb domain
CDDcd001673.83E-71560No hitNo description
PROSITE profilePS5129426.16561115IPR017930Myb domain
SMARTSM007172.0E-1665113IPR001005SANT/Myb domain
PfamPF002492.5E-1566110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2568115IPR009057Homeodomain-like
CDDcd001671.45E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMGRSGSKDV LNSGAWTASE DKILSDYINT YGLGGWTSLP RKAGLKRGGK SCRLRWLNYL  60
RPDIKRGNIS SEEEELLIRL HRLLGNRWSL IAGRLPGRTD NEIKNYWNTH FSKRIQMGEF  120
QPKIQNPCKR RGKIPSCSDE EVQTEKDICR NMPLKINPEA NCLKVVDDHN VEIDTSKSWC  180
QLLLEDCIGD YSYDRLDLTN GVQANNIIGT DEHQQLPSQA PAWLSKILEE KHCSSSCDDD  240
DDDDDDDNGE DDEGDDDDDE GDDDAAAADD DDEDDDDDED EHDDNDHDDR GDVDDDDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23111155108B-MYB
1h8a_C3e-231111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022750050.16e-60trichome differentiation protein GL1-like
TrEMBLA0A2H4Z0B03e-88A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
STRINGEMJ057454e-58(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-43myb domain protein 3