PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015433-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 811aa    MW: 92450.2 Da    PI: 5.7482
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015433-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.3e-0862110254
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       ++R+++tkeq ++L   Fe+   +s+++ +e     ++++++V++WF+Nr+++
  PSME_00015433-RA  62 KPRWKPTKEQKRILIPKFESG-MLSTAQLQEFG---QVEDAKVFYWFHNRKYR 110
                       89****************985.58888888877...69*************98 PP
2Homeobox49.38.1e-16306363254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++t+eq ++L   Fe+   +ps++e++ ++++l    ++++++V++WFqNr+++
  PSME_00015433-RA 306 KPRWKPTEEQKRILIPKFESgMVKPSRHEIKTITAQLqefgQVEDANVFYWFQNRKYR 363
                       89*****************99***********************************98 PP
3Homeobox30.85e-105405821754
                       HHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox  17 elFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       e++ +   +ps++e+++++++l    ++++++V++WF+Nr+++
  PSME_00015433-RA 540 EYYVSgMVKPSRHEIKRITAQLqefgQVEDANVFYWFHNRKYR 582
                       566656899********************************98 PP
4Wus_type_Homeobox811.5e-26305363260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++ P+++ei+ ita+L+e+G++ed+NVfyWFQNrk R
   PSME_00015433-RA 305 TKPRWKPTEEQKRILIPKFESGMVKPSRHEIKTITAQLQEFGQVEDANVFYWFQNRKYR 363
                        689******************************************************88 PP
5Wus_type_Homeobox60.15.2e-205385821660
  Wus_type_Homeobox  16 LeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                          e y sG++ P+++ei+rita+L+e+G++ed+NVfyWF Nrk R
   PSME_00015433-RA 538 GAEYYVSGMVKPSRHEIKRITAQLQEFGQVEDANVFYWFHNRKYR 582
                        567899*************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.2760118IPR001356Homeobox domain
PfamPF000462.6E-562110IPR001356Homeobox domain
SuperFamilySSF466892.74E-9302367IPR009057Homeodomain-like
PROSITE profilePS500719.815302367IPR001356Homeobox domain
SMARTSM003892.5E-4304371IPR001356Homeobox domain
PfamPF000462.0E-13306363IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-5306363IPR009057Homeodomain-like
CDDcd000863.97E-5306363No hitNo description
PfamPF000469.4E-8539582IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MSPMDNMKSK PRQSWSSMFK VKPSTSDNQG YGSSNSSAIS VPRPGYEGTS SANEERSWHK  60
TKPRWKPTKE QKRILIPKFE SGMLSTAQLQ EFGQVEDAKV FYWFHNRKYR IFNRVERTEK  120
NTKAIINVAS NTADSLYNTG ESYSSYVLED PFFTQDDPFF THQDRFFHTG ECSMQAVATA  180
PGVFSEGTGR TFSYEHLIHV MINKIHVEVP VGSINVRDAF GENAVLLHST GEPVLVNEWG  240
FTLECLQQGA KYYVPRQSWT SMFKVKPSTS DNQGYGSSNS SAISVQRPGY EGTSSANEER  300
SWHKTKPRWK PTEEQKRILI PKFESGMVKP SRHEIKTITA QLQEFGQVED ANVFYWFQNR  360
KYRIFNRVER TEKNTKATIN VASNTADSLY NTGESYSSYV LEDPFFTQQD RFFHTGEWYS  420
SYDPFFTQDD PFFTHHDNPF FIHKQDFHMQ MDEEMSNDQC SSMQAVATAA GVFNEGTGGS  480
VSYEHLIPVL INKIPVEVPV GSINVRDSFG ENAVLLHSTG EPVLVNEWGF TLECLQQGAE  540
YYVSGMVKPS RHEIKRITAQ LQEFGQVEDA NVFYWFHNRK YRIFNRVERT EKNTKAIINV  600
ASNTVDSLYN TGESYSSYED FHIKMNEEMS NDQCSSMQAV ATAAGVFNEG WSFSYEHLIP  660
VLINKIPVEV PVGSINVRNA FGENAVLLHS TREMVLVNEW GFTLECLQQG AEYYVDFHMQ  720
MNEEMSNDQC SSMQAVATAA GVFNEGRSFS YEHLIHVLIN KIPVEVPVGS INIRDAFGEN  780
AVLLHSRGKP VLVNEWGFPL ECLQQGVEYY V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH94e-86D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-22homeobox-3