PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015434-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 218aa    MW: 25525.5 Da    PI: 7.6082
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015434-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.62.1e-1363116654
                       S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++tkeq ++L   Fe+   +ps++e++++A++l    ++++++V++WF+N +++
  PSME_00015434-RA  63 KPTKEQKRILIPKFESgMVKPSRHEIKRIAAQLqefgQVEDANVFYWFHNTKYR 116
                       69*************99**********************************997 PP
2Wus_type_Homeobox68.71.1e-2263116760
  Wus_type_Homeobox   7 tPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                         Pt+eQ +iL   ++sG++ P+++ei+ri+a+L+e+G++ed+NVfyWF N k R
   PSME_00015434-RA  63 KPTKEQKRILIPKFESGMVKPSRHEIKRIAAQLQEFGQVEDANVFYWFHNTKYR 116
                        6**************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-444113IPR009057Homeodomain-like
SuperFamilySSF466892.67E-856120IPR009057Homeodomain-like
SMARTSM003890.002857124IPR001356Homeobox domain
CDDcd000860.0055559116No hitNo description
PfamPF000465.4E-1163116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDNMKYKPRQ SWTSMFKVKP STSDNQGYAS PNSSAISVQR PCYEGTSSAN EERSWHKTKP  60
SGKPTKEQKR ILIPKFESGM VKPSRHEIKR IAAQLQEFGQ VEDANVFYWF HNTKYRIFNR  120
VERTEKNTKA IINVASNTAD SLYNTRESYS SYVLEDPFFT QDDPFFTHQD RFFHTGDQDG  180
EPVLVNEWGF SLECLQQGVE YYVVYMMPKQ ISIQLYFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH92e-44D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-19homeobox-3