PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015435-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 286aa    MW: 32852.7 Da    PI: 6.179
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015435-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.19.4e-1659116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++t+eq ++L + Fe+   +ps++e++ ++++l    ++++ +V++WF+Nr+++
  PSME_00015435-RA  59 KPRWKPTEEQKRILITKFESgMVKPSRHEIKTITAQLqefgQVEDGNVFYWFHNRKYR 116
                       89*****************99***********************************98 PP
2Wus_type_Homeobox78.59e-2658116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL + ++sG++ P+++ei+ ita+L+e+G++ed NVfyWF Nrk R
   PSME_00015435-RA  58 TKPRWKPTEEQKRILITKFESGMVKPSRHEIKTITAQLQEFGQVEDGNVFYWFHNRKYR 116
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.32E-955120IPR009057Homeodomain-like
PROSITE profilePS500719.34555120IPR001356Homeobox domain
SMARTSM003895.6E-457124IPR001356Homeobox domain
CDDcd000862.11E-459116No hitNo description
Gene3DG3DSA:1.10.10.604.1E-559116IPR009057Homeodomain-like
PfamPF000462.2E-1359116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDNMKSKPRQ SWTSMFKVKP STSDNQGYGS SNSSAISVQR PGYEGTSSAN EERSWHKTKP  60
RWKPTEEQKR ILITKFESGM VKPSRHEIKT ITAQLQEFGQ VEDGNVFYWF HNRKYRIFNR  120
VQRTEKNTKA IINVAGNTAD SLYNTGEWYS SYDPFFTQDD PFFTHHDNPF FIHQQDFHMQ  180
MDEEMSNDQC SSMQAVATAS GVFNEGGSVS YEHLIHVVIN KIPVEVPVGS INVRDAFGEN  240
AVLLHSTGEP VLVNEWGFTL ECLQQGAEYY VVYLMPKQIS IPLYFE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH91e-91D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-22homeobox-3