PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015486-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 128aa    MW: 14106.8 Da    PI: 4.2789
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015486-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.7e-0799128331
                       --SS--HHHHHHHHHHHHH.SSS--HHHHH CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeere 31 
                       +R+++t+eq+++L+el++   r+p+ e+++
  PSME_00015486-RA  99 SRWNPTAEQVTILKELYRGgMRTPTSEQIQ 128
                       7*****************99*******997 PP
2Wus_type_Homeobox42.31.8e-1498128333
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiq 33 
                         +RW+Pt+eQ++iL+ely+ G+rtP++e+iq
   PSME_00015486-RA  98 GSRWNPTAEQVTILKELYRGGMRTPTSEQIQ 128
                        68***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.2E-499128IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVDPEAVEPV VPLVPYTGEA MEAAKFSDRD WAKKERLDLS GSYTSWQQQL DLVVATPTYV  60
PHTGVGYEIV VEHHGGDASS SPENEGSMLM IIDQLASGSR WNPTAEQVTI LKELYRGGMR  120
TPTSEQIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119491e-52JX411949.1 Picea abies WUSCHEL homeobox protein WOX5 (WOX5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8K43e-21R9R8K4_PICAB; WUSCHEL homeobox protein WOX5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.12e-10WOX family protein