PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015862-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 336aa    MW: 35932.9 Da    PI: 10.0369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015862-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10169213554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er+RR+ri +++  L+el+P +      K +Ka++L + ++Y+ s+
  PSME_00015862-RA 169 HSIAERQRRERIAERMKALQELVPIC-----NKTDKAAMLDEIIDYVLSM 213
                       99***********************8.....6**************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.52164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-13164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-10168216No hitNo description
Gene3DG3DSA:4.10.280.103.0E-13168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MWRPGYDDWH FGRSIFGFQA STATVKREFI RTLLAGTGGP GLLAVIRSPL SGSAVVAAAA  60
DTITIQSPTQ SWQPPYVGLN PLSLGQGRVH TARLLGKRLR DDQARPTNTG LFTNFGVAVG  120
SNNEQAGKQS TYELALAQPQ PQSLSPPGAV AAPARPRARA RCGQATDPHS IAERQRRERI  180
AERMKALQEL VPICNKTDKA AMLDEIIDYV LSMSRLGGAG AGGPLVADIS ADASNSMRLS  240
RIKKGNGNIC RDDEGLSITE EEVAKLMDEN MGSAMQYLQT KGLCLIPLSI AMTISGRLTM  300
QPNALVRIPS PCASNRVINS THPASESKSR SKEGTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275766.11e-55PREDICTED: transcription factor bHLH66
RefseqXP_019055536.11e-55PREDICTED: transcription factor bHLH66
RefseqXP_019055537.11e-55PREDICTED: transcription factor bHLH66
TrEMBLA0A1U8BGR42e-54A0A1U8BGR4_NELNU; transcription factor bHLH66
TrEMBLA0A3S3QVD61e-54A0A3S3QVD6_9MAGN; Transcription factor bHLH66
STRINGXP_010275766.14e-55(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-34LJRHL1-like 3