PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015906-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 191aa    MW: 21053.8 Da    PI: 6.4083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015906-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.32.7e-246821590
            DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      dCv+ pyf++++ +++fa vhk+FGasnv+k+l +lp  +r +a+ ++ yeA+ar+rd vyG+v++i++lq+q + +
  PSME_00015906-RA  6 DCVFTPYFCSDEgAAHFATVHKIFGASNVSKILLHLPMPDRCEAVVTISYEAHARLRDLVYGCVAHIFALQRQAQLA 82
                      7*********9989**********************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.706192IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-23682IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDSILDCVFT PYFCSDEGAA HFATVHKIFG ASNVSKILLH LPMPDRCEAV VTISYEAHAR  60
LRDLVYGCVA HIFALQRQAQ LASRVSSGSA LISANHPVIS SSSYSQHLKF PAHLSLPCQP  120
IPQPYNALLS RVKEENSRGF ATYMDYDFSL SPSDSSSPLM EVLQRCRSLE ENEGEDNGEL  180
QALAHALLRR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-197782696LOB family transfactor Ramosa2.1
5ly0_B3e-197782696LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D36e-81D5A9D3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-36lateral organ boundaries-domain 29