PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015948-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 381aa    MW: 41485.4 Da    PI: 5.4347
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015948-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-072667439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                      + C+ +    ++l+C+ ++ +lC +C ++ H g       H++
  PSME_00015948-RA 26 KPCNVCRITSASLYCRADSAYLCSSCDVKVH-GanrlasrHER 67
                      67*****999*********************.44667777776 PP
2zf-B_box26.31.5e-0868113342
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        + C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  PSME_00015948-RA  68 VWLCEVCEQAPAAVTCKADAASLCVSCDADIHSAnplarrHDRVPI 113
                       689*****************************66899999*99997 PP
3CCT69.11.1e-23317361145
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                       Rea++lRYkeKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  PSME_00015948-RA 317 REARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRAE 361
                       9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-102370IPR000315B-box-type zinc finger
PfamPF006437.2E-62667IPR000315B-box-type zinc finger
CDDcd000212.22E-62770No hitNo description
PROSITE profilePS5011910.1252870IPR000315B-box-type zinc finger
PROSITE profilePS5011910.65166113IPR000315B-box-type zinc finger
PfamPF006431.5E-668113IPR000315B-box-type zinc finger
CDDcd000212.30E-869113No hitNo description
SMARTSM003361.7E-971113IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648317359IPR010402CCT domain
PfamPF062031.5E-17317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVKEEDCNVA KEAGIVKEFQ AWTMPKPCNV CRITSASLYC RADSAYLCSS CDVKVHGANR  60
LASRHERVWL CEVCEQAPAA VTCKADAASL CVSCDADIHS ANPLARRHDR VPIVPFYECA  120
TVAKAFLPPP PPPPTSSLQD SDAAGTLHYD DDDDEIYAAE AASWLLPNPK SSAECAKNYD  180
NGDTGCFGVD GRPPPVSKAA GDYFGVVDMF PDVDPYLHLD YATSLEATGA TDSVVPNGSN  240
HDGAASTNSD CFDTEKVTYS YTSTMSLSHS VSSSSLDVGV VPDATLTDIS RPLNKGVFEL  300
ANPDVVHVGV QYVQLDREAR VLRYKEKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRA  360
EADVAHVYTS SELGYGLIPS F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5152280.0KF515228.1 Larix kaempferi CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259762.11e-100PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
TrEMBLV5L1B20.0V5L1B2_9SPER; CONSTANS-like protein
STRINGXP_010259762.13e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-80CONSTANS-like 4