PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016005-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34127.8 Da    PI: 8.5633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016005-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.41.8e-16180233356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+ +++keq   Lee F kn++   ++   LA++++L  rqV vWFqNrR++ k
  PSME_00016005-RA 180 KKIRLSKEQCSLLEESFSKNKTAEVKQSHALAMQMNLHPRQVDVWFQNRRTRNK 233
                       566899**********************************************98 PP
2HD-ZIP_I/II91.78.1e-30180266288
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       kk rlskeq +lLEesF+++++ e ++ ++la +++l+prqv+vWFqnrR R k  q+E+d+e+Lk + ++l++en+rL+ e +e r
  PSME_00016005-RA 180 KKIRLSKEQCSLLEESFSKNKTAEVKQSHALAMQMNLHPRQVDVWFQNRRTRNKFNQTEMDCEVLKMCNKSLADENRRLQIELKEFR 266
                       899*******************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-16168233IPR009057Homeodomain-like
PROSITE profilePS5007115.127175235IPR001356Homeobox domain
SMARTSM003891.1E-12177239IPR001356Homeobox domain
SuperFamilySSF466891.28E-15177243IPR009057Homeodomain-like
CDDcd000861.38E-12178233No hitNo description
PfamPF000461.1E-13180233IPR001356Homeobox domain
SMARTSM003406.1E-10235278IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGMDGHCKPE PFVGMQIGIG TATREVDQKY ASRKPFNRPL VELDLFPVAS VSPSHLGSPD  60
LRPQYGTLPW EKSLPRMDDG DGRGRSAGEG KDGLIHRVPV SRRFSVNELP ASCNYSEAAG  120
AIDASPSWNN TLYSNAINEE SGYGLNFKRK WVAAEELKNN RVCSTILSDV AEEEASGKIK  180
KIRLSKEQCS LLEESFSKNK TAEVKQSHAL AMQMNLHPRQ VDVWFQNRRT RNKFNQTEMD  240
CEVLKMCNKS LADENRRLQI ELKEFRVVKL AVCTSCEKVA AADHDTAAFT LEKVKSMFTP  300
GVSRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-36HD-ZIP family protein