PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016007-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 244aa    MW: 27434.3 Da    PI: 8.8227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016007-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-18120174256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ ++++eq   Lee F+kn+ p  ++++ LA++++L  rqV vWFqNrRa+ k
  PSME_00016007-RA 120 KKKLRLSREQSGLLEESFRKNKLPESKQKQALAAQMNLRPRQVEVWFQNRRARGK 174
                       6777899*********************************************987 PP
2HD-ZIP_I/II101.66.9e-33120207188
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +kk+rls+eq+ lLEesF++++  e+++K++la +++l+prqv+vWFqnrRAR k kq+E+d+++Lk++ + l++en++L+ke ++Lr
  PSME_00016007-RA 120 KKKLRLSREQSGLLEESFRKNKLPESKQKQALAAQMNLRPRQVEVWFQNRRARGKFKQVEMDCDRLKSWNELLVDENRKLHKELQDLR 207
                       59****************888888**************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-17107175IPR009057Homeodomain-like
PROSITE profilePS5007117.524116176IPR001356Homeobox domain
SMARTSM003891.2E-14118180IPR001356Homeobox domain
PfamPF000461.2E-15120174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-17120174IPR009057Homeodomain-like
CDDcd000867.04E-15120172No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
SMARTSM003401.8E-10176219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNLDLFPLMH PGKPGSPVLR PLFDTLPWDQ KAGIGDGDER TTGVSRGFDV NKLPASCYSN  60
EDSGAINVSS SSSLNSNVIK PESNCAIDSK RKHVSTEVLE NGRVCSMFLS DGEDQERAIK  120
KKLRLSREQS GLLEESFRKN KLPESKQKQA LAAQMNLRPR QVEVWFQNRR ARGKFKQVEM  180
DCDRLKSWNE LLVDENRKLH KELQDLRVLK YMPASAPEGT LTVCPSCEKV ASRAFDLGKL  240
DLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARGKFKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN44e-64A9NKN4_PICSI; Uncharacterized protein
STRINGAquca_067_00037.14e-46(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-42HD-ZIP family protein