PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016008-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 284aa    MW: 31642.8 Da    PI: 6.8888
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016008-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-17160214256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ ++++eq   Lee F+kn+ p  ++++ LA++++L  rqV vWFqNrRa+ k
  PSME_00016008-RA 160 KKKLRLSREQSGLLEERFRKNKLPESKQKRALAAQMNLRPRQVEVWFQNRRARGK 214
                       5677899*********************************************987 PP
2HD-ZIP_I/II98.66e-32160247188
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +kk+rls+eq+ lLEe F++++  e+++K +la +++l+prqv+vWFqnrRAR k kq+E+d+++Lk++ + l++en++L+ke ++Lr
  PSME_00016008-RA 160 KKKLRLSREQSGLLEERFRKNKLPESKQKRALAAQMNLRPRQVEVWFQNRRARGKFKQVEMDCDRLKSWNELLVDENRKLHKELQDLR 247
                       59****************888888**************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.85E-17148215IPR009057Homeodomain-like
PROSITE profilePS5007117.184156216IPR001356Homeobox domain
SMARTSM003891.1E-13158220IPR001356Homeobox domain
PfamPF000469.4E-15160214IPR001356Homeobox domain
CDDcd000861.14E-14160212No hitNo description
Gene3DG3DSA:1.10.10.601.5E-16165214IPR009057Homeodomain-like
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
SMARTSM003405.0E-11216259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAMDQDCNTG LCICKNVNIG TATSEAGQDQ ASQRPVNSPP VQLDLFPLMH PGESGSPVLH  60
PLFDTLPWDQ KDGIGDGDET TTGVSRGFDV NKLPASCYSN EDSGAINVSS SSSLNSNVIK  120
PESNCAIDSK RKQVSTEVLE NGRVCSMFLS DGEDQEHAIK KKLRLSREQS GLLEERFRKN  180
KLPESKQKRA LAAQMNLRPR QVEVWFQNRR ARGKFKQVEM DCDRLKSWNE LLVDENRKLH  240
KELQDLRVLK YMPASAPEAT LTVCPPSEKV ASRPFELGKL DLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216RRARGKFKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN49e-70A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-39HD-ZIP family protein