PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016017-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 225aa    MW: 25221.3 Da    PI: 7.8128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016017-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-182271255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  PSME_00016017-RA 22 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARMMCG 71
                      69******9.**********8.....334**********************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.85E-342179No hitNo description
PfamPF008476.1E-122271IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-212280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-342279IPR001471AP2/ERF domain
PROSITE profilePS5103221.2462279IPR001471AP2/ERF domain
SMARTSM003801.6E-392285IPR001471AP2/ERF domain
PRINTSPR003674.0E-112334IPR001471AP2/ERF domain
PRINTSPR003674.0E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MENITTERAA QEPGCIMARP QRYRGVRQRH WGSWVSEIRH PLLKTRIWLG TFETAEDAAR  60
AYDEAARMMC GPRARTNFPF NPNTPLSPSS KVLSSTLTAK LQRCYLASMQ GPRSGSSKKD  120
SMARADKNNN IHSSNQSLAC LRLENERPTN IGFWQKKAGS KQSESNWVMK LELEDEQHGN  180
STPKRETDDD IAQMIDELLE CGSLEICSPI ASADSNISTA ESMLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-181884168ATERF1
3gcc_A7e-181884168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0833190.0EF083319.1 Picea sitchensis clone WS0288_A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166025.17e-67ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-57ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA9NPV71e-140A9NPV7_PICSI; Uncharacterized protein
STRINGXP_009758477.19e-66(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]